Updated February 2026

7 Best Accounting Software for Non-Profits (2026)

Don't waste money on the wrong tools. We analyzed the top Accounting Software to help you find the perfect match for non-profits.

#1 RECOMMENDED
QuickBooks for Nonprofits Logo

QuickBooks for Nonprofits

🏆 General Accounting
4.7/5

The standard adapted for impact. It allows you to track donations vs. grants, manage program budgets, and generate the Statement of Financial Position required for board meetings.

Familiar to all treasurers Class tracking for programs Integration with donation platforms
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Runner Ups

#2
Aplos

Aplos

Fund Accounting
4.8

True fund accounting. Unlike QuickBooks, Aplos is built specifically for non-profits, making it easy to track restricted vs. unrestricted funds and generate Form 990 reports automatically.

What we like
  • True fund accounting logic
  • Built-in donation forms
  • Form 990 preparation
Drawbacks
  • More expensive than basic tools
  • Niche interface

Starting at

$79/mo

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#3
Xero

Xero

International NGOs
4.6

A strong alternative for international NGOs. Xero's tracking categories allow for flexible reporting on different fundraising campaigns, and its multi-currency support is excellent for global missions.

What we like
  • Unlimited users (great for boards)
  • Tracking categories for grants
  • 25% discount for non-profits
Drawbacks
  • Payroll is weak
  • Reporting needs customization

Starting at

$13/mo

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#4
Blackbaud Financial Edge

Blackbaud Financial Edge

Large Foundations
4.4

Enterprise grade. For large foundations and universities, Blackbaud offers granular control over complex grant requirements and multi-year budget planning that smaller tools can't handle.

What we like
  • Robust grant management
  • Scales to millions in revenue
  • Deep audit trails
Drawbacks
  • Extremely expensive
  • Old-school interface

Starting at

Custom

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#5
Wave

Wave

Small Clubs
4.5

For small charities and clubs. If you are a volunteer-run organization with a $0 budget, Wave provides the essential transparency and bank tracking needed to keep the books clean.

What we like
  • Free to use
  • Easy to share with board
  • Scan receipts for transparency
Drawbacks
  • No fund accounting features
  • Manual tracking of restricted funds

Starting at

Free

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Frequently Asked Questions

Common questions about choosing the right software.